Proteins

Principles of Information Storage in Small-Molecule Mixtures

Author(s): Christopher Rose, Jason Sello, Shui Ling Chen, Eamonn Kennedy, Joseph Geiser, Amanda Dombroski, Eunsuk Kim, Kady Oakley, Brenda M. Rubenstein, Hokchhay Tann, Peter M. Weber, Christopher Arcadia, Jacob K. Rosenstein, Sherief Reda
Principles of Information Storage in Small-Molecule Mixtures 829 785 Transactions on NanoBioscience (TNB)

Molecular data systems have the potential to store information at dramatically higher density than existing electronic media. Some of the first experimental demonstrations of this idea have used DNA, but…

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State Estimation for Discrete Time-Delayed Genetic Regulatory Networks With Stochastic Noises Under the Round-Robin Protocols

Author(s): Xiongbo Wan, Zidong Wang, Min Wu, Xiaohui Liu
State Estimation for Discrete Time-Delayed Genetic Regulatory Networks With Stochastic Noises Under the Round-Robin Protocols 220 260 Transactions on NanoBioscience (TNB)

This paper investigates the problem of state estimation for discrete time-delayed genetic regulatory networks with stochastic process noises and bounded exogenous disturbances under the Round-Robin (RR) protocols. The network measurement…

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Biomolecular Network Controllability With Drug Binding Information

Author(s): Lin Wu, Lingkai Tang, Min Li, Jianxin Wang, Fang-Xiang Wu
Biomolecular Network Controllability With Drug Binding Information 215 235 Transactions on NanoBioscience (TNB)

Complex networks are ubiquitous in nature. In biological systems, biomolecules interact with each other to form so-called biomolecular networks, which determine the cellular behaviors of living organisms. Controlling the cellular…

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Detection of Glutathione by Glutathione-S-Transferase – Nanoconjugate Ensemble Electrochemical Device

Author(s): Ujjwol Barman, Gargi Mukhopadhyay, Namami Goswami, Siddhartha S. Ghosh, Roy P. Palathinkal
Detection of Glutathione by Glutathione-S-Transferase – Nanoconjugate Ensemble Electrochemical Device 215 205 Transactions on NanoBioscience (TNB)

This paper reports a novel electrochemical method for detection of Glutathione (GSH) using Glutathione-S-Transferase (GST) – ZnO composite nanoparticles to investigate the prospects of the method for detection of cancer…

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PhosPred-RF: a novel sequence-based predictor for phosphorylation sites using sequential information only

Author(s): Leyi Wei, Pengwei Xing, Jijun Tang, Quan Zou
PhosPred-RF: a novel sequence-based predictor for phosphorylation sites using sequential information only 215 178 Transactions on NanoBioscience (TNB)

Many recent efforts have been made for the development of machine learning based methods for fast and accurate phosphorylation site prediction. Currently, a majority of well-performing methods are based on…

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Abnormality Detection in Correlated Gaussian Molecular Nano-Networks: Design and Analysis

Author(s): Farshad Lahouti, Siavash Ghavami
Abnormality Detection in Correlated Gaussian Molecular Nano-Networks: Design and Analysis 200 235 Transactions on NanoBioscience (TNB)

A nano-abnormality detection scheme (NADS) in molecular nano-networks is studied. This is motivated by the fact that early detection of diseases such as cancer plays a crucial role in their…

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TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine

Author(s): Guang-Qing Li, Zi Liu, Hong-Bin Shen, Dong-Jun Yu
TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine 215 220 Transactions on NanoBioscience (TNB)

As one of the most ubiquitous post-transcriptional modifications of RNA, N6-methyladenosine ( m 6 A  ) plays an essential role in many vital biological processes. The identification of m 6 A  sites in RNAs…

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Comprehensive Reactive Receiver Modeling for Diffusive Molecular Communication Systems: Reversible Binding, Molecule Degradation, and Finite Number of Receptors

Author(s): Arman Ahmadzadeh, Hamidreza Arjmandi, Robert Schober, Andreas Burkovski
Comprehensive Reactive Receiver Modeling for Diffusive Molecular Communication Systems: Reversible Binding, Molecule Degradation, and Finite Number of Receptors 215 230 Transactions on NanoBioscience (TNB)

This paper studies the problem of receiver modeling in molecular communication systems. We consider the diffusive molecular communication channel between a transmitter nano-machine and a receiver nano-machine in a fluid…

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Identification of DNA-Binding Proteins by Combining Auto-Cross Covariance Transformation and Ensemble Learning

Author(s): Bin Liu, Shanyi Wang, Qiwen Dong, Shumin Li, Xuan Liu
Identification of DNA-Binding Proteins by Combining Auto-Cross Covariance Transformation and Ensemble Learning 556 235 Transactions on NanoBioscience (TNB)

DNA-binding proteins play a pivotal role in various intra- and extra-cellular activities ranging from DNA replication to gene expression control. With the rapid development of next generation of sequencing technique,…

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Optimizing Associative Experimental Design for Protein Crystallization Screening

Author(s): İmren Dinç, Marc L. Pusey, Ramazan S. Aygün
Optimizing Associative Experimental Design for Protein Crystallization Screening 556 235 Transactions on NanoBioscience (TNB)

The goal of protein crystallization screening is the determination of the main factors of importance to crystallizing the protein under investigation. One of the major issues about determining these factors…

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